Peer-reviewed Publications
Encoding information through p53 signaling  
Purvis JE, Karhohs KW, Mock C, Batchelor E, Loewer A, Lahav G. p53 dynamics control cell fate. In revision  
Predicting combinatorial agonist signaling | PMID: 20562863  
Chatterjee MS, Purvis JE, Brass LF, Diamond SL. Pairwise agonist scanning predicts cellular signaling responses to combinatorial stimuli. (2010) Nature Biotechnology 28(7):727-32.  
Cathepsin L inhibitor blocks virus infection | PMID: 20466822  
Shah PP, Wang T, Kaletsky RL, Myers MC, Purvis JE, Jing H, Huryn DM, Greenbaum DC, Smith AB 3rd, Bates P, Diamond SL. A small-molecule oxocarbazate inhibitor of human cathepsin L blocks severe acute respiratory syndrome and ebola pseudotype virus infection into human embryonic kidney 293T cells. (2010) Molecular Pharmacology 78(2):319-24.  
Steady-state kinetic modeling | PMID: 19266013  
Purvis JE, Radhakrishnan R, Diamond SL. Steady-state kinetic modeling constrains cellular resting states and dynamic behavior. (2009) PLoS Computational Biology 5(3):e1000298.  
SAR for Cathepsin L inhibitor | PMID: 18598021  
Beavers MP, Myers MC, Shah PP, Purvis JE, Diamond SL, Cooperman BS, Huryn DM, Smith AB 3rd. Molecular docking of cathepsin L inhibitors in the binding site of papain. (2008) Journal of Chemical Information and Modeling 48(7):1464-72.  
"The Platelet Model" version 1.0 | PMID: 18596227  
Purvis JE, Chatterjee MS, Brass LF, Diamond SL. A molecular signaling model of platelet phosphoinositide and calcium regulation during homeostasis and P2Y1 activation. (2008) Blood 112(10):4069-79.  
Network branching model for EGFR | PMID: 18412405  
Purvis, J, Ilango, V, Radhakrishnan, R. Role of Network Branching in Eliciting Differential Short-Term Signaling Responses in the Hyper-Sensitive Epidermal Growth Factor Receptor Mutants Implicated in Lung Cancer. (2008) Biotechnology Progress 24(3):540-53.  
A potent Cathepsin L inhibitor | PMID: 18403718  
Shah PP, Myers MC, Beavers MP, Purvis JE, Jing H, Grieser HJ, Sharlow ER, Napper AD, Huryn DM, Cooperman BS, Smith AB, Diamond SL. Kinetic Characterization and Molecular Docking of a Novel, Potent, and Selective Slow-binding Inhibitor of Human Cathepsin L. (2008) Molecular Pharmacology 74(1):34-41.  
Inhibition model for EGFR signaling    
Purvis J, Liu Y, Ilango V, Radhakrishnan R. Efficacy of tyrosine kinase inhibitors in the mutants of the epidermal growth factor receptor through a multiscale molecular/ systems model for phosphorylation and inhibition. (2007) Proceedings of Foundations of Systems Biology in Engineering.  
Multiscale signaling model for EGFR | PMID: 17273938    
Liu Y, Purvis J, Shih A, Weinstein J, Agrawal N, Radhakrishnan R. A multiscale computational approach to dissect early events in the Erb family receptor mediated activation, differential signaling, and relevance to oncogenic transformations. (2007) Annals of Biomedical Engineering 35(6):1012-25.  
Engineering osmotolerance in E. coli | PMID: 16000787    
Purvis JE, Yomano LP, Ingram LO. Enhanced trehalose production improves growth of Escherichia coli under osmotic stress. Applied and Environmental Microbiology (2005) 71:3761-9.  
Microarray analysis of ethanol tolerance | PMID: 12675606    
Gonzalez R, Tao H, Purvis JE, York SW, Shanmugam KT, Ingram LO. Gene array-based identification of changes that contribute to ethanol tolerance in ethanologenic Escherichia coli: comparison of KO11 (parent) to LY01 (resistant mutant). Biotechnology Progress (2003) 19:612-23.